Dcode.org: Tools Developed by the Research Group of Ivan Ovcharenko at the National Library of Medicine

 Dcode.org   ECR Browser   ECRBase   Mulan   zPicture   DiRE   SynoR   rVista 2.0   multiTF   eShadow   CAPE   SNPDelScore 
 

Update (3/29/2008): We have recently modified ECR Browser alignments by including repetitive elements. All ECRbase ECRs correspond to new ECR Browser alignments now. Additionally, individual ECRs have been annotated according to their relationship to RefSeq genes and repetitive elements.
ECRbase is the Database of Evolutionary Conserved Regions (ECRs), Promoters,
and Transcription Factor Binding Sites in Vertebrate Genomes
created using ECR Browser alignments

  Evolutionary Conserved Regions (ECRs)
from multi-genome comparisons
  Promoters
of RefSeq and UCSC known genes
  Synteny
between genomes
  Transcription Factor Binding Sites
in promoters and ECRs
  SQL
index of summary tables
  Citing
ECRbase in publications
    Details

NCBI DCODE.org Comparative Genomics Developments (www.dcode.org)