Dcode.org
: Tools Developed by
the Research Group of Ivan Ovcharenko
at the National Library of Medicine
Dcode.org
ECR Browser
Mulan
zPicture
DiRE
SynoR
rVista 2.0
multiTF
SNPDelScore
1.5kb promoters of vertebrate genes.
Base genome
Gene annotation
Number of promoters
Date
Size
File
Human (hg18)
Other species RefSeq
16.8k
01-30-2008
9.0Mb
promoters.hg18.xenoRefFlat.txt.gz
UCSC known genes
21.2k
01-30-2008
9.6Mb
promoters.hg18.knownGene.txt.gz
RefSeq
17.7k
01-30-2008
8.5Mb
promoters.hg18.refGene.txt.gz
Macaque (rheMac2)
RefSeq
525
08-12-2009
269.0kb
promoters.rheMac2.refGene.txt.gz
Other species RefSeq
11.5k
01-30-2008
6.7Mb
promoters.rheMac2.xenoRefFlat.txt.gz
RefSeq
385
01-30-2008
197.6kb
promoters.rheMac2.refGene.txt.gz
Other species RefSeq
10.6k
08-12-2009
6.4Mb
promoters.rheMac2.xenoRefFlat.txt.gz
Chimp (panTro2)
Other species RefSeq
0
02-01-2008
54
promoters.panTro2.xenoRefFlat.txt.gz
Other species RefSeq
0
02-01-2008
54
promoters.panTro2.xenoRefFlat.txt.gz
Other species RefSeq
0
02-01-2008
54
promoters.panTro2.xenoRefFlat.txt.gz
Other species RefSeq
0
02-01-2008
54
promoters.panTro2.xenoRefFlat.txt.gz
RefSeq
16.9k
02-01-2008
7.8Mb
promoters.panTro2.refGene.txt.gz
Mouse (mm9)
RefSeq
18.3k
01-30-2008
8.9Mb
promoters.mm9.refGene.txt.gz
UCSC known genes
23.7k
01-30-2008
10.1Mb
promoters.mm9.knownGene.txt.gz
Other species RefSeq
15.9k
01-30-2008
8.3Mb
promoters.mm9.xenoRefFlat.txt.gz
Rat (rn4)
Other species RefSeq
16.2k
01-30-2008
8.7Mb
promoters.rn4.xenoRefFlat.txt.gz
UCSC known genes
6.9k
01-30-2008
3.5Mb
promoters.rn4.knownGene.txt.gz
RefSeq
13.5k
01-30-2008
6.7Mb
promoters.rn4.refGene.txt.gz
Cow (bosTau3)
RefSeq
9.9k
01-30-2008
4.9Mb
promoters.bosTau3.refGene.txt.gz
Dog (canFam2)
RefSeq
831
01-30-2008
429.6kb
promoters.canFam2.refGene.txt.gz
Other species RefSeq
15.2k
01-30-2008
8.3Mb
promoters.canFam2.xenoRefFlat.txt.gz
Opossum (monDom4)
Other species RefSeq
15.2k
01-30-2008
8.7Mb
promoters.monDom4.xenoRefFlat.txt.gz
RefSeq
161
01-30-2008
81.0kb
promoters.monDom4.refGene.txt.gz
Chicken (galGal3)
RefSeq
3.9k
01-30-2008
1.8Mb
promoters.galGal3.refGene.txt.gz
Other species RefSeq
7.8k
01-30-2008
4.3Mb
promoters.galGal3.xenoRefFlat.txt.gz
Frog (xenTro2)
RefSeq
6.6k
01-30-2008
3.1Mb
promoters.xenTro2.refGene.txt.gz
Zebrafish (danRer5)
RefSeq
12.0k
01-30-2008
5.8Mb
promoters.danRer5.refGene.txt.gz
Promoters are stored in FASTA format.
Each promoter description header follows the following format:
<promoterIndex[1..N]> <strand> <genomicLocation> <length> <geneName(s)>
Note:
Repeats are indicated by lower case letters.
NCBI DCODE.org Comparative Genomics Developments (
www.dcode.org
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