Dcode.org: Tools Developed by the Research Group of Ivan Ovcharenko at the National Library of Medicine

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Evolutionary Conserved Regions (ECRs) from whole-genome ECR Browser alignments. Update (3/29/2008): We have recently modified ECR Browser alignments by including repetitive elements. All listed ECRs correspond to new ECR Browser alignments. Additionally, we annotated individual ECRs according to their relationship to RefSeq genes and repetitive elements (see annotation description at the bottom of the page). Standard ECRs :: at least 100bps/70% identity Base genome Secondary genome Number of ECRs Date Size File Human (hg18) Macaque (rheMac2) 803084 02-25-2008 53.1Mb ecrs.hg18rheMac2.txt.gz Chimp (panTro2) 367806 03-24-2008 46.5Mb ecrs.hg18panTro2.txt.gz Mouse (mm9) 2483855 01-08-2008 61.6Mb ecrs.hg18mm9.txt.gz Rat (rn4) 2104860 01-08-2008 52.2Mb ecrs.hg18rn4.txt.gz Cow (bosTau3) 3362474 02-18-2008 88.2Mb ecrs.hg18bosTau3.txt.gz Dog (canFam2) 3557030 02-26-2008 94.0Mb ecrs.hg18canFam2.txt.gz Opossum (monDom4) 734514 02-24-2008 19.6Mb ecrs.hg18monDom4.txt.gz Chicken (galGal3) 206651 01-07-2008 5.3Mb ecrs.hg18galGal3.txt.gz Frog (xenTro2) 119121 01-08-2008 3.1Mb ecrs.hg18xenTro2.txt.gz Zebrafish (danRer5) 197211 02-07-2008 4.9Mb ecrs.hg18danRer5.txt.gz Fugu (fr2) 60882 01-07-2008 1.6Mb ecrs.hg18fr2.txt.gz Tetraodon (tetNig1) 61746 02-12-2008 1.6Mb ecrs.hg18tetNig1.txt.gz Macaque (rheMac2) Human (hg18) 714554 02-26-2008 33.1Mb ecrs.rheMac2hg18.txt.gz Mouse (mm9) 2144980 02-12-2008 49.3Mb ecrs.rheMac2mm9.txt.gz Rat (rn4) 1895746 02-12-2008 43.8Mb ecrs.rheMac2rn4.txt.gz Cow (bosTau3) 3209104 02-29-2008 75.4Mb ecrs.rheMac2bosTau3.txt.gz Dog (canFam2) 3388292 02-12-2008 79.4Mb ecrs.rheMac2canFam2.txt.gz Opossum (monDom4) 656468 02-24-2008 16.3Mb ecrs.rheMac2monDom4.txt.gz Chicken (galGal3) 193057 02-12-2008 4.5Mb ecrs.rheMac2galGal3.txt.gz Frog (xenTro2) 101605 02-12-2008 2.4Mb ecrs.rheMac2xenTro2.txt.gz Zebrafish (danRer5) 187006 03-04-2008 4.3Mb ecrs.rheMac2danRer5.txt.gz Fugu (fr2) 53767 02-12-2008 1.3Mb ecrs.rheMac2fr2.txt.gz Tetraodon (tetNig1) 55200 03-04-2008 1.3Mb ecrs.rheMac2tetNig1.txt.gz Chimp (panTro2) Human (hg18) 422524 03-26-2008 46.2Mb ecrs.panTro2hg18.txt.gz Mouse (mm9) 2425788 02-05-2008 59.9Mb ecrs.panTro2mm9.txt.gz Rat (rn4) 2060274 02-05-2008 50.9Mb ecrs.panTro2rn4.txt.gz Dog (canFam2) 3557819 01-11-2008 93.7Mb ecrs.panTro2canFam2.txt.gz Opossum (monDom4) 718197 02-24-2008 19.0Mb ecrs.panTro2monDom4.txt.gz Chicken (galGal3) 201420 01-11-2008 5.2Mb ecrs.panTro2galGal3.txt.gz Frog (xenTro2) 321145 01-12-2008 8.7Mb ecrs.panTro2xenTro2.txt.gz Fugu (fr2) 55177 01-11-2008 1.5Mb ecrs.panTro2fr2.txt.gz Mouse (mm9) Human (hg18) 2430945 01-08-2008 61.5Mb ecrs.mm9hg18.txt.gz Macaque (rheMac2) 2317081 01-08-2008 58.5Mb ecrs.mm9rheMac2.txt.gz Chimp (panTro2) 2398707 01-08-2008 60.7Mb ecrs.mm9panTro2.txt.gz Rat (rn4) 2111934 02-04-2008 79.1Mb ecrs.mm9rn4.txt.gz Dog (canFam2) 1772895 01-08-2008 45.2Mb ecrs.mm9canFam2.txt.gz Opossum (monDom4) 687337 02-24-2008 18.8Mb ecrs.mm9monDom4.txt.gz Chicken (galGal3) 203527 01-08-2008 5.3Mb ecrs.mm9galGal3.txt.gz Frog (xenTro2) 131052 01-09-2008 3.4Mb ecrs.mm9xenTro2.txt.gz Zebrafish (danRer5) 270732 02-05-2008 7.3Mb ecrs.mm9danRer5.txt.gz Fugu (fr2) 109252 01-08-2008 2.9Mb ecrs.mm9fr2.txt.gz Rat (rn4) Human (hg18) 2325522 01-09-2008 58.3Mb ecrs.rn4hg18.txt.gz Macaque (rheMac2) 2216219 02-28-2008 55.3Mb ecrs.rn4rheMac2.txt.gz Chimp (panTro2) 2289337 02-06-2008 57.4Mb ecrs.rn4panTro2.txt.gz Mouse (mm9) 1994133 02-11-2008 74.7Mb ecrs.rn4mm9.txt.gz Dog (canFam2) 1719859 01-09-2008 43.3Mb ecrs.rn4canFam2.txt.gz Opossum (monDom4) 715266 02-24-2008 19.0Mb ecrs.rn4monDom4.txt.gz Chicken (galGal3) 178343 01-09-2008 4.3Mb ecrs.rn4galGal3.txt.gz Frog (xenTro2) 121382 01-09-2008 2.9Mb ecrs.rn4xenTro2.txt.gz Fugu (fr2) 112196 01-09-2008 2.8Mb ecrs.rn4fr2.txt.gz Cow (bosTau3) Human (hg18) 3154648 02-18-2008 73.8Mb ecrs.bosTau3hg18.txt.gz Macaque (rheMac2) 3136075 02-29-2008 73.1Mb ecrs.bosTau3rheMac2.txt.gz Opossum (monDom4) 977377 02-27-2008 22.2Mb ecrs.bosTau3monDom4.txt.gz Chicken (galGal3) 164332 01-10-2008 4.0Mb ecrs.bosTau3galGal3.txt.gz Frog (xenTro2) 86389 01-10-2008 2.1Mb ecrs.bosTau3xenTro2.txt.gz Fugu (fr2) 49035 01-10-2008 1.2Mb ecrs.bosTau3fr2.txt.gz Dog (canFam2) Human (hg18) 3277077 02-26-2008 85.5Mb ecrs.canFam2hg18.txt.gz Macaque (rheMac2) 3274781 01-10-2008 84.6Mb ecrs.canFam2rheMac2.txt.gz Chimp (panTro2) 3281886 01-10-2008 85.9Mb ecrs.canFam2panTro2.txt.gz Mouse (mm9) 1488436 01-10-2008 36.4Mb ecrs.canFam2mm9.txt.gz Rat (rn4) 1373784 01-11-2008 33.6Mb ecrs.canFam2rn4.txt.gz Opossum (monDom4) 633965 02-24-2008 16.2Mb ecrs.canFam2monDom4.txt.gz Chicken (galGal3) 185155 01-10-2008 4.4Mb ecrs.canFam2galGal3.txt.gz Opossum (monDom4) Human (hg18) 911043 02-21-2008 24.0Mb ecrs.monDom4hg18.txt.gz Macaque (rheMac2) 871867 02-24-2008 22.7Mb ecrs.monDom4rheMac2.txt.gz Chimp (panTro2) 890228 02-24-2008 23.3Mb ecrs.monDom4panTro2.txt.gz Mouse (mm9) 699021 02-24-2008 18.1Mb ecrs.monDom4mm9.txt.gz Rat (rn4) 664621 02-24-2008 17.2Mb ecrs.monDom4rn4.txt.gz Cow (bosTau3) 806214 02-22-2008 20.3Mb ecrs.monDom4bosTau3.txt.gz Dog (canFam2) 872758 02-22-2008 22.6Mb ecrs.monDom4canFam2.txt.gz Chicken (galGal3) 231800 02-22-2008 5.6Mb ecrs.monDom4galGal3.txt.gz Frog (xenTro2) 126547 02-22-2008 3.1Mb ecrs.monDom4xenTro2.txt.gz Zebrafish (danRer5) 162113 02-22-2008 3.7Mb ecrs.monDom4danRer5.txt.gz Fugu (fr2) 63929 02-21-2008 1.5Mb ecrs.monDom4fr2.txt.gz Tetraodon (tetNig1) 68369 02-22-2008 1.7Mb ecrs.monDom4tetNig1.txt.gz Chicken (galGal3) Human (hg18) 186334 01-08-2008 4.6Mb ecrs.galGal3hg18.txt.gz Macaque (rheMac2) 181365 01-08-2008 4.5Mb ecrs.galGal3rheMac2.txt.gz Chimp (panTro2) 183414 01-08-2008 4.5Mb ecrs.galGal3panTro2.txt.gz Mouse (mm9) 161347 01-08-2008 4.0Mb ecrs.galGal3mm9.txt.gz Rat (rn4) 152222 01-08-2008 3.7Mb ecrs.galGal3rn4.txt.gz Cow (bosTau3) 161338 01-08-2008 3.9Mb ecrs.galGal3bosTau3.txt.gz Dog (canFam2) 167909 01-08-2008 4.1Mb ecrs.galGal3canFam2.txt.gz Opossum (monDom4) 193624 02-24-2008 4.8Mb ecrs.galGal3monDom4.txt.gz Frog (xenTro2) 104018 01-08-2008 2.5Mb ecrs.galGal3xenTro2.txt.gz Zebrafish (danRer5) 49581 01-08-2008 1.2Mb ecrs.galGal3danRer5.txt.gz Fugu (fr2) 46067 01-08-2008 1.1Mb ecrs.galGal3fr2.txt.gz Tetraodon (tetNig1) 38415 01-08-2008 923.0kb ecrs.galGal3tetNig1.txt.gz Frog (xenTro2) Human (hg18) 101714 01-09-2008 2.5Mb ecrs.xenTro2hg18.txt.gz Macaque (rheMac2) 96226 01-09-2008 2.3Mb ecrs.xenTro2rheMac2.txt.gz Chimp (panTro2) 98359 01-09-2008 2.4Mb ecrs.xenTro2panTro2.txt.gz Mouse (mm9) 100818 01-09-2008 2.4Mb ecrs.xenTro2mm9.txt.gz Rat (rn4) 94747 01-09-2008 2.3Mb ecrs.xenTro2rn4.txt.gz Cow (bosTau3) 86276 01-09-2008 2.1Mb ecrs.xenTro2bosTau3.txt.gz Opossum (monDom4) 105785 02-27-2008 2.6Mb ecrs.xenTro2monDom4.txt.gz Chicken (galGal3) 109122 01-09-2008 2.6Mb ecrs.xenTro2galGal3.txt.gz Zebrafish (danRer5) 71452 01-09-2008 1.8Mb ecrs.xenTro2danRer5.txt.gz Fugu (fr2) 58960 01-09-2008 1.4Mb ecrs.xenTro2fr2.txt.gz Tetraodon (tetNig1) 42314 01-09-2008 993.5kb ecrs.xenTro2tetNig1.txt.gz Zebrafish (danRer5) Human (hg18) 119845 02-07-2008 2.8Mb ecrs.danRer5hg18.txt.gz Macaque (rheMac2) 106742 03-04-2008 2.4Mb ecrs.danRer5rheMac2.txt.gz Mouse (mm9) 141273 02-27-2008 3.3Mb ecrs.danRer5mm9.txt.gz Opossum (monDom4) 116189 02-27-2008 2.7Mb ecrs.danRer5monDom4.txt.gz Chicken (galGal3) 75241 01-11-2008 1.7Mb ecrs.danRer5galGal3.txt.gz Frog (xenTro2) 101797 01-11-2008 2.4Mb ecrs.danRer5xenTro2.txt.gz Fugu (fr2) 264641 01-11-2008 6.3Mb ecrs.danRer5fr2.txt.gz Fugu (fr2) Human (hg18) 63737 01-11-2008 1.5Mb ecrs.fr2hg18.txt.gz Macaque (rheMac2) 59878 01-11-2008 1.4Mb ecrs.fr2rheMac2.txt.gz Chimp (panTro2) 59487 01-11-2008 1.4Mb ecrs.fr2panTro2.txt.gz Mouse (mm9) 71608 01-11-2008 1.8Mb ecrs.fr2mm9.txt.gz Rat (rn4) 68836 01-11-2008 1.7Mb ecrs.fr2rn4.txt.gz Cow (bosTau3) 60031 01-11-2008 1.4Mb ecrs.fr2bosTau3.txt.gz Opossum (monDom4) 52822 02-27-2008 1.3Mb ecrs.fr2monDom4.txt.gz Chicken (galGal3) 56979 01-11-2008 1.3Mb ecrs.fr2galGal3.txt.gz Frog (xenTro2) 44970 01-11-2008 1.1Mb ecrs.fr2xenTro2.txt.gz Zebrafish (danRer5) 152943 01-11-2008 3.8Mb ecrs.fr2danRer5.txt.gz Tetraodon (tetNig1) 330302 01-11-2008 8.1Mb ecrs.fr2tetNig1.txt.gz Tetraodon (tetNig1) Human (hg18) 64202 02-12-2008 1.6Mb ecrs.tetNig1hg18.txt.gz Macaque (rheMac2) 60732 03-04-2008 1.5Mb ecrs.tetNig1rheMac2.txt.gz Opossum (monDom4) 54132 02-27-2008 1.3Mb ecrs.tetNig1monDom4.txt.gz Chicken (galGal3) 41582 01-12-2008 958.7kb ecrs.tetNig1galGal3.txt.gz Frog (xenTro2) 31882 01-12-2008 744.3kb ecrs.tetNig1xenTro2.txt.gz Fugu (fr2) 255969 01-12-2008 6.3Mb ecrs.tetNig1fr2.txt.gz Core ECRs :: at least 350bps/77% identity Base genome Secondary genome Number of ECRs Date Size File Human (hg18) Macaque (rheMac2) 396246 02-25-2008 41.3Mb coreEcrs.hg18rheMac2.txt.gz Chimp (panTro2) 182584 03-24-2008 40.3Mb coreEcrs.hg18panTro2.txt.gz Mouse (mm9) 221717 01-08-2008 6.8Mb coreEcrs.hg18mm9.txt.gz Rat (rn4) 203232 01-08-2008 6.2Mb coreEcrs.hg18rn4.txt.gz Cow (bosTau3) 688224 02-18-2008 21.4Mb coreEcrs.hg18bosTau3.txt.gz Dog (canFam2) 811782 02-26-2008 24.8Mb coreEcrs.hg18canFam2.txt.gz Opossum (monDom4) 78434 02-24-2008 2.4Mb coreEcrs.hg18monDom4.txt.gz Chicken (galGal3) 24320 01-07-2008 690.8kb coreEcrs.hg18galGal3.txt.gz Frog (xenTro2) 10293 01-08-2008 312.4kb coreEcrs.hg18xenTro2.txt.gz Zebrafish (danRer5) 9842 02-07-2008 278.9kb coreEcrs.hg18danRer5.txt.gz Fugu (fr2) 2393 01-07-2008 77.8kb coreEcrs.hg18fr2.txt.gz Tetraodon (tetNig1) 2478 02-12-2008 81.3kb coreEcrs.hg18tetNig1.txt.gz Macaque (rheMac2) Human (hg18) 384331 02-26-2008 24.1Mb coreEcrs.rheMac2hg18.txt.gz Mouse (mm9) 193617 02-12-2008 5.1Mb coreEcrs.rheMac2mm9.txt.gz Rat (rn4) 185274 02-12-2008 4.9Mb coreEcrs.rheMac2rn4.txt.gz Cow (bosTau3) 612371 02-29-2008 16.3Mb coreEcrs.rheMac2bosTau3.txt.gz Dog (canFam2) 720230 02-12-2008 18.5Mb coreEcrs.rheMac2canFam2.txt.gz Opossum (monDom4) 72319 02-24-2008 2.0Mb coreEcrs.rheMac2monDom4.txt.gz Chicken (galGal3) 23019 02-12-2008 592.3kb coreEcrs.rheMac2galGal3.txt.gz Frog (xenTro2) 7791 02-12-2008 209.6kb coreEcrs.rheMac2xenTro2.txt.gz Zebrafish (danRer5) 8123 03-04-2008 215.0kb coreEcrs.rheMac2danRer5.txt.gz Fugu (fr2) 2148 02-12-2008 63.6kb coreEcrs.rheMac2fr2.txt.gz Tetraodon (tetNig1) 2335 03-04-2008 70.8kb coreEcrs.rheMac2tetNig1.txt.gz Chimp (panTro2) Human (hg18) 245050 03-26-2008 40.7Mb coreEcrs.panTro2hg18.txt.gz Mouse (mm9) 217001 02-05-2008 6.6Mb coreEcrs.panTro2mm9.txt.gz Rat (rn4) 198582 02-05-2008 6.0Mb coreEcrs.panTro2rn4.txt.gz Dog (canFam2) 808726 01-11-2008 24.5Mb coreEcrs.panTro2canFam2.txt.gz Opossum (monDom4) 76932 02-24-2008 2.3Mb coreEcrs.panTro2monDom4.txt.gz Chicken (galGal3) 24171 01-11-2008 685.0kb coreEcrs.panTro2galGal3.txt.gz Frog (xenTro2) 64898 01-12-2008 2.1Mb coreEcrs.panTro2xenTro2.txt.gz Fugu (fr2) 2178 01-11-2008 69.5kb coreEcrs.panTro2fr2.txt.gz Mouse (mm9) Human (hg18) 268750 01-08-2008 8.7Mb coreEcrs.mm9hg18.txt.gz Macaque (rheMac2) 251894 01-08-2008 8.0Mb coreEcrs.mm9rheMac2.txt.gz Chimp (panTro2) 264878 01-08-2008 8.5Mb coreEcrs.mm9panTro2.txt.gz Rat (rn4) 964763 02-04-2008 48.9Mb coreEcrs.mm9rn4.txt.gz Dog (canFam2) 209348 01-08-2008 6.6Mb coreEcrs.mm9canFam2.txt.gz Opossum (monDom4) 48580 02-24-2008 1.6Mb coreEcrs.mm9monDom4.txt.gz Chicken (galGal3) 18299 01-08-2008 524.3kb coreEcrs.mm9galGal3.txt.gz Frog (xenTro2) 6752 01-09-2008 197.5kb coreEcrs.mm9xenTro2.txt.gz Zebrafish (danRer5) 33620 02-05-2008 1.3Mb coreEcrs.mm9danRer5.txt.gz Fugu (fr2) 2743 01-08-2008 85.5kb coreEcrs.mm9fr2.txt.gz Rat (rn4) Human (hg18) 269842 01-09-2008 8.5Mb coreEcrs.rn4hg18.txt.gz Macaque (rheMac2) 249828 02-28-2008 7.7Mb coreEcrs.rn4rheMac2.txt.gz Chimp (panTro2) 262961 02-06-2008 8.2Mb coreEcrs.rn4panTro2.txt.gz Mouse (mm9) 949004 02-11-2008 47.4Mb coreEcrs.rn4mm9.txt.gz Dog (canFam2) 210813 01-09-2008 6.5Mb coreEcrs.rn4canFam2.txt.gz Opossum (monDom4) 50279 02-24-2008 1.6Mb coreEcrs.rn4monDom4.txt.gz Chicken (galGal3) 17005 01-09-2008 457.4kb coreEcrs.rn4galGal3.txt.gz Frog (xenTro2) 6526 01-09-2008 183.6kb coreEcrs.rn4xenTro2.txt.gz Fugu (fr2) 2761 01-09-2008 84.9kb coreEcrs.rn4fr2.txt.gz Cow (bosTau3) Human (hg18) 701521 02-18-2008 18.3Mb coreEcrs.bosTau3hg18.txt.gz Macaque (rheMac2) 641890 02-29-2008 16.8Mb coreEcrs.bosTau3rheMac2.txt.gz Opossum (monDom4) 78854 02-27-2008 2.2Mb coreEcrs.bosTau3monDom4.txt.gz Chicken (galGal3) 19875 01-10-2008 525.5kb coreEcrs.bosTau3galGal3.txt.gz Frog (xenTro2) 5980 01-10-2008 164.3kb coreEcrs.bosTau3xenTro2.txt.gz Fugu (fr2) 1893 01-10-2008 59.8kb coreEcrs.bosTau3fr2.txt.gz Dog (canFam2) Human (hg18) 799427 02-26-2008 23.4Mb coreEcrs.canFam2hg18.txt.gz Macaque (rheMac2) 725817 01-10-2008 21.0Mb coreEcrs.canFam2rheMac2.txt.gz Chimp (panTro2) 792765 01-10-2008 23.2Mb coreEcrs.canFam2panTro2.txt.gz Mouse (mm9) 167536 01-10-2008 4.7Mb coreEcrs.canFam2mm9.txt.gz Rat (rn4) 153432 01-11-2008 4.3Mb coreEcrs.canFam2rn4.txt.gz Opossum (monDom4) 74846 02-24-2008 2.2Mb coreEcrs.canFam2monDom4.txt.gz Chicken (galGal3) 21630 01-10-2008 582.4kb coreEcrs.canFam2galGal3.txt.gz Opossum (monDom4) Human (hg18) 84663 02-21-2008 2.6Mb coreEcrs.monDom4hg18.txt.gz Macaque (rheMac2) 80077 02-24-2008 2.4Mb coreEcrs.monDom4rheMac2.txt.gz Chimp (panTro2) 80710 02-24-2008 2.5Mb coreEcrs.monDom4panTro2.txt.gz Mouse (mm9) 48954 02-24-2008 1.5Mb coreEcrs.monDom4mm9.txt.gz Rat (rn4) 46051 02-24-2008 1.4Mb coreEcrs.monDom4rn4.txt.gz Cow (bosTau3) 70956 02-22-2008 2.1Mb coreEcrs.monDom4bosTau3.txt.gz Dog (canFam2) 82513 02-22-2008 2.5Mb coreEcrs.monDom4canFam2.txt.gz Chicken (galGal3) 27421 02-22-2008 732.0kb coreEcrs.monDom4galGal3.txt.gz Frog (xenTro2) 8905 02-22-2008 249.8kb coreEcrs.monDom4xenTro2.txt.gz Zebrafish (danRer5) 5339 02-22-2008 141.1kb coreEcrs.monDom4danRer5.txt.gz Fugu (fr2) 2844 02-21-2008 76.5kb coreEcrs.monDom4fr2.txt.gz Tetraodon (tetNig1) 2497 02-22-2008 76.0kb coreEcrs.monDom4tetNig1.txt.gz Chicken (galGal3) Human (hg18) 22756 01-08-2008 629.5kb coreEcrs.galGal3hg18.txt.gz Macaque (rheMac2) 22029 01-08-2008 609.0kb coreEcrs.galGal3rheMac2.txt.gz Chimp (panTro2) 22317 01-08-2008 616.7kb coreEcrs.galGal3panTro2.txt.gz Mouse (mm9) 16593 01-08-2008 464.3kb coreEcrs.galGal3mm9.txt.gz Rat (rn4) 15566 01-08-2008 433.3kb coreEcrs.galGal3rn4.txt.gz Cow (bosTau3) 19314 01-08-2008 532.1kb coreEcrs.galGal3bosTau3.txt.gz Dog (canFam2) 20267 01-08-2008 557.6kb coreEcrs.galGal3canFam2.txt.gz Opossum (monDom4) 25828 02-24-2008 710.9kb coreEcrs.galGal3monDom4.txt.gz Frog (xenTro2) 7403 01-08-2008 205.4kb coreEcrs.galGal3xenTro2.txt.gz Zebrafish (danRer5) 1705 01-08-2008 53.0kb coreEcrs.galGal3danRer5.txt.gz Fugu (fr2) 1569 01-08-2008 49.7kb coreEcrs.galGal3fr2.txt.gz Tetraodon (tetNig1) 1342 01-08-2008 40.9kb coreEcrs.galGal3tetNig1.txt.gz Frog (xenTro2) Human (hg18) 7107 01-09-2008 199.2kb coreEcrs.xenTro2hg18.txt.gz Macaque (rheMac2) 6892 01-09-2008 190.5kb coreEcrs.xenTro2rheMac2.txt.gz Chimp (panTro2) 7003 01-09-2008 196.7kb coreEcrs.xenTro2panTro2.txt.gz Mouse (mm9) 6372 01-09-2008 176.1kb coreEcrs.xenTro2mm9.txt.gz Rat (rn4) 6060 01-09-2008 167.2kb coreEcrs.xenTro2rn4.txt.gz Cow (bosTau3) 5962 01-09-2008 164.6kb coreEcrs.xenTro2bosTau3.txt.gz Opossum (monDom4) 8001 02-27-2008 219.3kb coreEcrs.xenTro2monDom4.txt.gz Chicken (galGal3) 7773 01-09-2008 207.1kb coreEcrs.xenTro2galGal3.txt.gz Zebrafish (danRer5) 6300 01-09-2008 202.0kb coreEcrs.xenTro2danRer5.txt.gz Fugu (fr2) 4026 01-09-2008 121.4kb coreEcrs.xenTro2fr2.txt.gz Tetraodon (tetNig1) 2449 01-09-2008 63.6kb coreEcrs.xenTro2tetNig1.txt.gz Zebrafish (danRer5) Human (hg18) 3502 02-07-2008 106.0kb coreEcrs.danRer5hg18.txt.gz Macaque (rheMac2) 2784 03-04-2008 84.7kb coreEcrs.danRer5rheMac2.txt.gz Mouse (mm9) 3853 02-27-2008 129.6kb coreEcrs.danRer5mm9.txt.gz Opossum (monDom4) 3541 02-27-2008 105.4kb coreEcrs.danRer5monDom4.txt.gz Chicken (galGal3) 2112 01-11-2008 62.1kb coreEcrs.danRer5galGal3.txt.gz Frog (xenTro2) 4174 01-11-2008 120.3kb coreEcrs.danRer5xenTro2.txt.gz Fugu (fr2) 10919 01-11-2008 340.2kb coreEcrs.danRer5fr2.txt.gz Fugu (fr2) Human (hg18) 2304 01-11-2008 71.0kb coreEcrs.fr2hg18.txt.gz Macaque (rheMac2) 2054 01-11-2008 62.0kb coreEcrs.fr2rheMac2.txt.gz Chimp (panTro2) 2097 01-11-2008 63.7kb coreEcrs.fr2panTro2.txt.gz Mouse (mm9) 2180 01-11-2008 68.3kb coreEcrs.fr2mm9.txt.gz Rat (rn4) 2109 01-11-2008 65.4kb coreEcrs.fr2rn4.txt.gz Cow (bosTau3) 2136 01-11-2008 65.5kb coreEcrs.fr2bosTau3.txt.gz Opossum (monDom4) 1891 02-27-2008 57.0kb coreEcrs.fr2monDom4.txt.gz Chicken (galGal3) 2024 01-11-2008 57.7kb coreEcrs.fr2galGal3.txt.gz Frog (xenTro2) 1631 01-11-2008 49.2kb coreEcrs.fr2xenTro2.txt.gz Zebrafish (danRer5) 7498 01-11-2008 244.1kb coreEcrs.fr2danRer5.txt.gz Tetraodon (tetNig1) 115510 01-11-2008 3.1Mb coreEcrs.fr2tetNig1.txt.gz Tetraodon (tetNig1) Human (hg18) 2394 02-12-2008 74.5kb coreEcrs.tetNig1hg18.txt.gz Macaque (rheMac2) 2321 03-04-2008 71.2kb coreEcrs.tetNig1rheMac2.txt.gz Opossum (monDom4) 1997 02-27-2008 61.3kb coreEcrs.tetNig1monDom4.txt.gz Chicken (galGal3) 1528 01-12-2008 43.8kb coreEcrs.tetNig1galGal3.txt.gz Frog (xenTro2) 991 01-12-2008 29.4kb coreEcrs.tetNig1xenTro2.txt.gz Fugu (fr2) 101294 01-12-2008 2.8Mb coreEcrs.tetNig1fr2.txt.gz File format: <location1> <length1> <annotation> <percentIdentity> <location2> Annotation format: Comma-separated list of region lengths and types within an ECR. Listed regions start at the first ECR position and completely span the ECR. These are non-overlapping regions. Type abbreviations: cds - coding, int - intronic, utr - UTR, rep - repeat, non - intergenic noncoding region.
NCBI DCODE.org Comparative Genomics Developments (www.dcode.org)