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1.5kb promoters of vertebrate genes.


Base genomeGene annotationNumber of promotersDateSizeFile
Human (hg18)
RefSeq17.7k01-30-20088.5Mbpromoters.hg18.refGene.txt.gz
UCSC known genes21.2k01-30-20089.6Mbpromoters.hg18.knownGene.txt.gz
Other species RefSeq16.8k01-30-20089.0Mbpromoters.hg18.xenoRefFlat.txt.gz
Macaque (rheMac2)
Other species RefSeq10.6k08-12-20096.4Mbpromoters.rheMac2.xenoRefFlat.txt.gz
RefSeq38501-30-2008197.6kbpromoters.rheMac2.refGene.txt.gz
Other species RefSeq11.5k01-30-20086.7Mbpromoters.rheMac2.xenoRefFlat.txt.gz
RefSeq52508-12-2009269.0kbpromoters.rheMac2.refGene.txt.gz
Chimp (panTro2)
Other species RefSeq002-01-200854promoters.panTro2.xenoRefFlat.txt.gz
Other species RefSeq002-01-200854promoters.panTro2.xenoRefFlat.txt.gz
Other species RefSeq002-01-200854promoters.panTro2.xenoRefFlat.txt.gz
Other species RefSeq002-01-200854promoters.panTro2.xenoRefFlat.txt.gz
RefSeq16.9k02-01-20087.8Mbpromoters.panTro2.refGene.txt.gz
Mouse (mm9)
RefSeq18.3k01-30-20088.9Mbpromoters.mm9.refGene.txt.gz
UCSC known genes23.7k01-30-200810.1Mbpromoters.mm9.knownGene.txt.gz
Other species RefSeq15.9k01-30-20088.3Mbpromoters.mm9.xenoRefFlat.txt.gz
Rat (rn4)
UCSC known genes6.9k01-30-20083.5Mbpromoters.rn4.knownGene.txt.gz
RefSeq13.5k01-30-20086.7Mbpromoters.rn4.refGene.txt.gz
Other species RefSeq16.2k01-30-20088.7Mbpromoters.rn4.xenoRefFlat.txt.gz
Cow (bosTau3)
RefSeq9.9k01-30-20084.9Mbpromoters.bosTau3.refGene.txt.gz
Dog (canFam2)
RefSeq83101-30-2008429.6kbpromoters.canFam2.refGene.txt.gz
Other species RefSeq15.2k01-30-20088.3Mbpromoters.canFam2.xenoRefFlat.txt.gz
Opossum (monDom4)
RefSeq16101-30-200881.0kbpromoters.monDom4.refGene.txt.gz
Other species RefSeq15.2k01-30-20088.7Mbpromoters.monDom4.xenoRefFlat.txt.gz
Chicken (galGal3)
Other species RefSeq7.8k01-30-20084.3Mbpromoters.galGal3.xenoRefFlat.txt.gz
RefSeq3.9k01-30-20081.8Mbpromoters.galGal3.refGene.txt.gz
Frog (xenTro2)
RefSeq6.6k01-30-20083.1Mbpromoters.xenTro2.refGene.txt.gz
Zebrafish (danRer5)
RefSeq12.0k01-30-20085.8Mbpromoters.danRer5.refGene.txt.gz



Promoters are stored in FASTA format.
Each promoter description header follows the following format:
<promoterIndex[1..N]> <strand> <genomicLocation> <length> <geneName(s)>

Note: Repeats are indicated by lower case letters.


NCBI DCODE.org Comparative Genomics Developments (www.dcode.org)