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Transcription factor binding sites (TFBS) in coreECRs.
TFBS length data [matrix_length.txt]


Core ECRs :: at least 350bps/77% identity
Base genomeSecondary genomeTRANSFACDateNumber of TFBSFile sizeFile
Human (hg18)
Macaque (rheMac2)v10203-28-2008290.9M997.3Mbtfbs_coreEcrs.hg18rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-2008310.0M997.9Mbtfbs_coreEcrs.hg18panTro2.v102.txt.gz
Mouse (mm9)v10203-28-200830.3M119.5Mbtfbs_coreEcrs.hg18mm9.v102.txt.gz
Rat (rn4)v10203-28-200827.7M108.9Mbtfbs_coreEcrs.hg18rn4.v102.txt.gz
Cow (bosTau3)v10203-28-200887.8M351.1Mbtfbs_coreEcrs.hg18bosTau3.v102.txt.gz
Dog (canFam2)v10203-28-2008106.7M427.8Mbtfbs_coreEcrs.hg18canFam2.v102.txt.gz
Opossum (monDom4)v10203-28-200810.4M41.4Mbtfbs_coreEcrs.hg18monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20083.4M13.5Mbtfbs_coreEcrs.hg18galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-20081.0M4.0Mbtfbs_coreEcrs.hg18xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-2008305.0k1.3Mbtfbs_coreEcrs.hg18danRer5.v102.txt.gz
Fugu (fr2)v10203-28-2008326.5k1.2Mbtfbs_coreEcrs.hg18fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-28-2008354.0k1.3Mbtfbs_coreEcrs.hg18tetNig1.v102.txt.gz
Macaque (rheMac2)
Human (hg18)v10203-29-2008280.0M967.4Mbtfbs_coreEcrs.rheMac2hg18.v102.txt.gz
Mouse (mm9)v10203-29-200826.6M105.4Mbtfbs_coreEcrs.rheMac2mm9.v102.txt.gz
Rat (rn4)v10203-29-200825.4M100.3Mbtfbs_coreEcrs.rheMac2rn4.v102.txt.gz
Cow (bosTau3)v10203-29-200878.7M315.2Mbtfbs_coreEcrs.rheMac2bosTau3.v102.txt.gz
Dog (canFam2)v10203-29-200895.0M381.6Mbtfbs_coreEcrs.rheMac2canFam2.v102.txt.gz
Opossum (monDom4)v10203-29-20089.7M38.6Mbtfbs_coreEcrs.rheMac2monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-20083.2M12.7Mbtfbs_coreEcrs.rheMac2galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-2008913.2k3.7Mbtfbs_coreEcrs.rheMac2xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-29-2008281.3k1.2Mbtfbs_coreEcrs.rheMac2danRer5.v102.txt.gz
Fugu (fr2)v10203-29-2008300.1k1.1Mbtfbs_coreEcrs.rheMac2fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-29-2008326.7k1.2Mbtfbs_coreEcrs.rheMac2tetNig1.v102.txt.gz
Chimp (panTro2)
Human (hg18)v10203-29-2008312.8M1024.0Mbtfbs_coreEcrs.panTro2hg18.v102.txt.gz
Mouse (mm9)v10203-29-200829.5M116.6Mbtfbs_coreEcrs.panTro2mm9.v102.txt.gz
Rat (rn4)v10203-29-200826.9M106.4Mbtfbs_coreEcrs.panTro2rn4.v102.txt.gz
Dog (canFam2)v10203-29-2008105.4M423.0Mbtfbs_coreEcrs.panTro2canFam2.v102.txt.gz
Opossum (monDom4)v10203-29-200810.3M40.9Mbtfbs_coreEcrs.panTro2monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-20083.3M13.4Mbtfbs_coreEcrs.panTro2galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-20081.6M6.9Mbtfbs_coreEcrs.panTro2xenTro2.v102.txt.gz
Fugu (fr2)v10203-29-2008303.0k1.2Mbtfbs_coreEcrs.panTro2fr2.v102.txt.gz
Mouse (mm9)
Human (hg18)v10203-28-200834.9M138.1Mbtfbs_coreEcrs.mm9hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-200832.5M129.1Mbtfbs_coreEcrs.mm9rheMac2.v102.txt.gz
Chimp (panTro2)v10203-29-200833.8M134.2Mbtfbs_coreEcrs.mm9panTro2.v102.txt.gz
Rat (rn4)v10203-29-2008262.2M998.4Mbtfbs_coreEcrs.mm9rn4.v102.txt.gz
Dog (canFam2)v10203-28-200826.8M106.5Mbtfbs_coreEcrs.mm9canFam2.v102.txt.gz
Opossum (monDom4)v10203-28-20086.0M24.0Mbtfbs_coreEcrs.mm9monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20082.5M9.8Mbtfbs_coreEcrs.mm9galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-2008805.4k3.2Mbtfbs_coreEcrs.mm9xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-2008763.7k3.2Mbtfbs_coreEcrs.mm9danRer5.v102.txt.gz
Fugu (fr2)v10203-28-2008329.3k1.2Mbtfbs_coreEcrs.mm9fr2.v102.txt.gz
Rat (rn4)
Human (hg18)v10203-29-200832.8M130.0Mbtfbs_coreEcrs.rn4hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-200830.6M121.6Mbtfbs_coreEcrs.rn4rheMac2.v102.txt.gz
Chimp (panTro2)v10203-29-200831.8M126.2Mbtfbs_coreEcrs.rn4panTro2.v102.txt.gz
Mouse (mm9)v10203-29-2008264.6M1004.0Mbtfbs_coreEcrs.rn4mm9.v102.txt.gz
Dog (canFam2)v10203-29-200825.2M100.1Mbtfbs_coreEcrs.rn4canFam2.v102.txt.gz
Opossum (monDom4)v10203-29-20085.8M23.0Mbtfbs_coreEcrs.rn4monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-20082.3M9.3Mbtfbs_coreEcrs.rn4galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-2008766.0k3.1Mbtfbs_coreEcrs.rn4xenTro2.v102.txt.gz
Fugu (fr2)v10203-29-2008290.7k1.1Mbtfbs_coreEcrs.rn4fr2.v102.txt.gz
Cow (bosTau3)
Human (hg18)v10203-28-200897.4M386.7Mbtfbs_coreEcrs.bosTau3hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-200888.6M352.3Mbtfbs_coreEcrs.bosTau3rheMac2.v102.txt.gz
Opossum (monDom4)v10203-28-20089.2M36.6Mbtfbs_coreEcrs.bosTau3monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20082.8M11.2Mbtfbs_coreEcrs.bosTau3galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-2008783.0k3.1Mbtfbs_coreEcrs.bosTau3xenTro2.v102.txt.gz
Fugu (fr2)v10203-28-2008284.4k1.1Mbtfbs_coreEcrs.bosTau3fr2.v102.txt.gz
Dog (canFam2)
Human (hg18)v10203-28-2008110.1M439.2Mbtfbs_coreEcrs.canFam2hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-200899.2M396.3Mbtfbs_coreEcrs.canFam2rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-2008107.8M430.8Mbtfbs_coreEcrs.canFam2panTro2.v102.txt.gz
Mouse (mm9)v10203-28-200823.9M93.9Mbtfbs_coreEcrs.canFam2mm9.v102.txt.gz
Rat (rn4)v10203-28-200821.8M85.8Mbtfbs_coreEcrs.canFam2rn4.v102.txt.gz
Opossum (monDom4)v10203-28-20089.8M38.8Mbtfbs_coreEcrs.canFam2monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20083.0M12.1Mbtfbs_coreEcrs.canFam2galGal3.v102.txt.gz
Opossum (monDom4)
Human (hg18)v10203-29-20089.4M37.7Mbtfbs_coreEcrs.monDom4hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-20089.0M36.0Mbtfbs_coreEcrs.monDom4rheMac2.v102.txt.gz
Chimp (panTro2)v10203-29-20089.2M36.8Mbtfbs_coreEcrs.monDom4panTro2.v102.txt.gz
Mouse (mm9)v10203-29-20085.5M21.7Mbtfbs_coreEcrs.monDom4mm9.v102.txt.gz
Rat (rn4)v10203-29-20085.0M20.0Mbtfbs_coreEcrs.monDom4rn4.v102.txt.gz
Cow (bosTau3)v10203-29-20088.1M32.5Mbtfbs_coreEcrs.monDom4bosTau3.v102.txt.gz
Dog (canFam2)v10203-29-20089.2M36.6Mbtfbs_coreEcrs.monDom4canFam2.v102.txt.gz
Chicken (galGal3)v10203-29-20083.5M14.1Mbtfbs_coreEcrs.monDom4galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-2008946.7k3.8Mbtfbs_coreEcrs.monDom4xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-29-2008300.2k1.1Mbtfbs_coreEcrs.monDom4danRer5.v102.txt.gz
Fugu (fr2)v10203-29-2008279.6k969.3kbtfbs_coreEcrs.monDom4fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-29-2008257.8k932.2kbtfbs_coreEcrs.monDom4tetNig1.v102.txt.gz
Chicken (galGal3)
Human (hg18)v10203-28-20083.1M12.4Mbtfbs_coreEcrs.galGal3hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-20083.0M11.9Mbtfbs_coreEcrs.galGal3rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-20083.0M12.1Mbtfbs_coreEcrs.galGal3panTro2.v102.txt.gz
Mouse (mm9)v10203-28-20082.2M8.9Mbtfbs_coreEcrs.galGal3mm9.v102.txt.gz
Rat (rn4)v10203-28-20082.1M8.3Mbtfbs_coreEcrs.galGal3rn4.v102.txt.gz
Cow (bosTau3)v10203-28-20082.6M10.5Mbtfbs_coreEcrs.galGal3bosTau3.v102.txt.gz
Dog (canFam2)v10203-28-20082.8M11.0Mbtfbs_coreEcrs.galGal3canFam2.v102.txt.gz
Opossum (monDom4)v10203-28-20083.5M13.9Mbtfbs_coreEcrs.galGal3monDom4.v102.txt.gz
Frog (xenTro2)v10203-28-2008920.9k3.7Mbtfbs_coreEcrs.galGal3xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-2008213.5k840.7kbtfbs_coreEcrs.galGal3danRer5.v102.txt.gz
Fugu (fr2)v10203-28-2008209.6k812.9kbtfbs_coreEcrs.galGal3fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-28-2008176.9k677.7kbtfbs_coreEcrs.galGal3tetNig1.v102.txt.gz
Frog (xenTro2)
Human (hg18)v10203-29-2008921.3k3.6Mbtfbs_coreEcrs.xenTro2hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-2008871.6k3.5Mbtfbs_coreEcrs.xenTro2rheMac2.v102.txt.gz
Chimp (panTro2)v10203-29-2008896.6k3.6Mbtfbs_coreEcrs.xenTro2panTro2.v102.txt.gz
Mouse (mm9)v10203-29-2008726.2k2.9Mbtfbs_coreEcrs.xenTro2mm9.v102.txt.gz
Rat (rn4)v10203-29-2008678.0k2.7Mbtfbs_coreEcrs.xenTro2rn4.v102.txt.gz
Cow (bosTau3)v10203-29-2008743.1k3.0Mbtfbs_coreEcrs.xenTro2bosTau3.v102.txt.gz
Opossum (monDom4)v10203-29-2008936.3k3.7Mbtfbs_coreEcrs.xenTro2monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-2008974.4k3.9Mbtfbs_coreEcrs.xenTro2galGal3.v102.txt.gz
Zebrafish (danRer5)v10203-29-2008204.8k857.0kbtfbs_coreEcrs.xenTro2danRer5.v102.txt.gz
Fugu (fr2)v10203-29-2008174.0k708.8kbtfbs_coreEcrs.xenTro2fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-29-2008143.5k566.7kbtfbs_coreEcrs.xenTro2tetNig1.v102.txt.gz
Zebrafish (danRer5)
Human (hg18)v10203-28-2008302.7k1.2Mbtfbs_coreEcrs.danRer5hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-2008280.2k1.1Mbtfbs_coreEcrs.danRer5rheMac2.v102.txt.gz
Mouse (mm9)v10203-28-2008329.3k1.2Mbtfbs_coreEcrs.danRer5mm9.v102.txt.gz
Opossum (monDom4)v10203-28-2008257.8k1.0Mbtfbs_coreEcrs.danRer5monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-2008262.0k1.0Mbtfbs_coreEcrs.danRer5galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-2008224.1k888.5kbtfbs_coreEcrs.danRer5xenTro2.v102.txt.gz
Fugu (fr2)v10203-28-2008925.8k3.6Mbtfbs_coreEcrs.danRer5fr2.v102.txt.gz
Fugu (fr2)
Human (hg18)v10203-28-2008274.7k1.1Mbtfbs_coreEcrs.fr2hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-2008245.5k943.6kbtfbs_coreEcrs.fr2rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-2008248.8k955.4kbtfbs_coreEcrs.fr2panTro2.v102.txt.gz
Mouse (mm9)v10203-28-2008248.4k956.2kbtfbs_coreEcrs.fr2mm9.v102.txt.gz
Rat (rn4)v10203-28-2008228.6k883.3kbtfbs_coreEcrs.fr2rn4.v102.txt.gz
Cow (bosTau3)v10203-28-2008268.5k1.0Mbtfbs_coreEcrs.fr2bosTau3.v102.txt.gz
Opossum (monDom4)v10203-28-2008222.2k858.7kbtfbs_coreEcrs.fr2monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-2008240.5k931.9kbtfbs_coreEcrs.fr2galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-2008183.3k714.9kbtfbs_coreEcrs.fr2xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-2008757.6k3.0Mbtfbs_coreEcrs.fr2danRer5.v102.txt.gz
Tetraodon (tetNig1)v10203-28-200823.2M89.8Mbtfbs_coreEcrs.fr2tetNig1.v102.txt.gz
Tetraodon (tetNig1)
Human (hg18)v10203-29-2008352.8k1.3Mbtfbs_coreEcrs.tetNig1hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-2008336.8k1.2Mbtfbs_coreEcrs.tetNig1rheMac2.v102.txt.gz
Opossum (monDom4)v10203-29-2008275.9k1.0Mbtfbs_coreEcrs.tetNig1monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-2008216.2k817.8kbtfbs_coreEcrs.tetNig1galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-2008133.7k510.9kbtfbs_coreEcrs.tetNig1xenTro2.v102.txt.gz
Fugu (fr2)v10203-29-200828.1M105.0Mbtfbs_coreEcrs.tetNig1fr2.v102.txt.gz


File format:
> element1Location
  tfbsName1 strand_position1 strand_position2 ... strand_positionN
   ...
  tfbsNameK strand_position1 strand_position2 ... strand_positionN
> element2Location
...

For example, the record "SMAD3_Q6 +82 -101" describes two instances of the SMAD3_Q6 transcription factor binding site, one on a positive strand at the position 82, another one on a negative strand at the position 101. All positions are relative to the ECR/promoter starting position.


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