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Transcription factor binding sites (TFBS) in ECRs.
TFBS length data [matrix_length.txt]


Standard ECRs :: at least 100bps/70% identity
Base genomeSecondary genomeTRANSFACDateNumber of TFBSFile sizeFile
Human (hg18)
Macaque (rheMac2)v10203-28-2008290.2M1033.6Mbtfbs_ecrs.hg18rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-2008309.8M1018.0Mbtfbs_ecrs.hg18panTro2.v102.txt.gz
Mouse (mm9)v10203-28-200881.7M339.2Mbtfbs_ecrs.hg18mm9.v102.txt.gz
Rat (rn4)v10203-28-200874.6M308.2Mbtfbs_ecrs.hg18rn4.v102.txt.gz
Cow (bosTau3)v10203-28-2008189.8M779.0Mbtfbs_ecrs.hg18bosTau3.v102.txt.gz
Dog (canFam2)v10203-28-2008215.4M883.7Mbtfbs_ecrs.hg18canFam2.v102.txt.gz
Opossum (monDom4)v10203-28-200828.1M115.4Mbtfbs_ecrs.hg18monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-200810.4M41.9Mbtfbs_ecrs.hg18galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-20084.6M18.8Mbtfbs_ecrs.hg18xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-20082.3M10.4Mbtfbs_ecrs.hg18danRer5.v102.txt.gz
Fugu (fr2)v10203-28-20082.3M9.2Mbtfbs_ecrs.hg18fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-28-20082.4M9.3Mbtfbs_ecrs.hg18tetNig1.v102.txt.gz
Macaque (rheMac2)
Human (hg18)v10203-29-2008279.6M998.9Mbtfbs_ecrs.rheMac2hg18.v102.txt.gz
Mouse (mm9)v10203-29-200871.8M298.3Mbtfbs_ecrs.rheMac2mm9.v102.txt.gz
Rat (rn4)v10203-29-200868.3M282.4Mbtfbs_ecrs.rheMac2rn4.v102.txt.gz
Cow (bosTau3)v10203-29-2008176.6M726.5Mbtfbs_ecrs.rheMac2bosTau3.v102.txt.gz
Dog (canFam2)v10203-29-2008200.1M822.3Mbtfbs_ecrs.rheMac2canFam2.v102.txt.gz
Opossum (monDom4)v10203-29-200826.0M106.9Mbtfbs_ecrs.rheMac2monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-20089.7M39.4Mbtfbs_ecrs.rheMac2galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-20084.3M17.3Mbtfbs_ecrs.rheMac2xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-29-20082.1M9.6Mbtfbs_ecrs.rheMac2danRer5.v102.txt.gz
Fugu (fr2)v10203-29-20082.1M8.4Mbtfbs_ecrs.rheMac2fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-29-20082.1M8.5Mbtfbs_ecrs.rheMac2tetNig1.v102.txt.gz
Chimp (panTro2)
Human (hg18)v10203-29-2008312.7M1036.0Mbtfbs_ecrs.panTro2hg18.v102.txt.gz
Mouse (mm9)v10203-29-200880.1M332.4Mbtfbs_ecrs.panTro2mm9.v102.txt.gz
Rat (rn4)v10203-29-200873.2M302.1Mbtfbs_ecrs.panTro2rn4.v102.txt.gz
Dog (canFam2)v10203-29-2008213.9M877.2Mbtfbs_ecrs.panTro2canFam2.v102.txt.gz
Opossum (monDom4)v10203-29-200827.6M113.3Mbtfbs_ecrs.panTro2monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-200810.2M41.1Mbtfbs_ecrs.panTro2galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-20085.1M22.5Mbtfbs_ecrs.panTro2xenTro2.v102.txt.gz
Fugu (fr2)v10203-29-20082.2M8.6Mbtfbs_ecrs.panTro2fr2.v102.txt.gz
Mouse (mm9)
Human (hg18)v10203-28-2008102.7M422.0Mbtfbs_ecrs.mm9hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-200895.3M392.3Mbtfbs_ecrs.mm9rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-2008100.1M412.1Mbtfbs_ecrs.mm9panTro2.v102.txt.gz
Rat (rn4)v10203-29-2008269.6M1064.8Mbtfbs_ecrs.mm9rn4.v102.txt.gz
Dog (canFam2)v10203-28-200872.4M297.6Mbtfbs_ecrs.mm9canFam2.v102.txt.gz
Opossum (monDom4)v10203-28-200818.6M78.0Mbtfbs_ecrs.mm9monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20088.4M34.4Mbtfbs_ecrs.mm9galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-20084.2M17.1Mbtfbs_ecrs.mm9xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-20082.9M13.6Mbtfbs_ecrs.mm9danRer5.v102.txt.gz
Fugu (fr2)v10203-28-20082.3M9.8Mbtfbs_ecrs.mm9fr2.v102.txt.gz
Rat (rn4)
Human (hg18)v10203-29-200896.9M398.4Mbtfbs_ecrs.rn4hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-200890.1M370.8Mbtfbs_ecrs.rn4rheMac2.v102.txt.gz
Chimp (panTro2)v10203-29-200894.5M389.1Mbtfbs_ecrs.rn4panTro2.v102.txt.gz
Mouse (mm9)v10203-29-2008271.3M1066.7Mbtfbs_ecrs.rn4mm9.v102.txt.gz
Dog (canFam2)v10203-29-200868.0M280.2Mbtfbs_ecrs.rn4canFam2.v102.txt.gz
Opossum (monDom4)v10203-29-200817.8M75.2Mbtfbs_ecrs.rn4monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-20088.0M32.4Mbtfbs_ecrs.rn4galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-20083.9M16.1Mbtfbs_ecrs.rn4xenTro2.v102.txt.gz
Fugu (fr2)v10203-29-20082.2M9.4Mbtfbs_ecrs.rn4fr2.v102.txt.gz
Cow (bosTau3)
Human (hg18)v10203-28-2008208.0M845.6Mbtfbs_ecrs.bosTau3hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-2008197.4M804.3Mbtfbs_ecrs.bosTau3rheMac2.v102.txt.gz
Opossum (monDom4)v10203-28-200825.3M106.3Mbtfbs_ecrs.bosTau3monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20088.9M35.6Mbtfbs_ecrs.bosTau3galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-20083.9M15.7Mbtfbs_ecrs.bosTau3xenTro2.v102.txt.gz
Fugu (fr2)v10203-28-20082.2M8.5Mbtfbs_ecrs.bosTau3fr2.v102.txt.gz
Dog (canFam2)
Human (hg18)v10203-28-2008223.5M909.6Mbtfbs_ecrs.canFam2hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-2008211.3M862.2Mbtfbs_ecrs.canFam2rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-2008219.9M896.4Mbtfbs_ecrs.canFam2panTro2.v102.txt.gz
Mouse (mm9)v10203-28-200861.3M250.3Mbtfbs_ecrs.canFam2mm9.v102.txt.gz
Rat (rn4)v10203-28-200856.2M229.6Mbtfbs_ecrs.canFam2rn4.v102.txt.gz
Opossum (monDom4)v10203-28-200825.8M105.5Mbtfbs_ecrs.canFam2monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20089.3M37.4Mbtfbs_ecrs.canFam2galGal3.v102.txt.gz
Opossum (monDom4)
Human (hg18)v10203-29-200825.7M108.6Mbtfbs_ecrs.monDom4hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-200824.5M103.7Mbtfbs_ecrs.monDom4rheMac2.v102.txt.gz
Chimp (panTro2)v10203-29-200825.1M106.1Mbtfbs_ecrs.monDom4panTro2.v102.txt.gz
Mouse (mm9)v10203-29-200817.0M72.6Mbtfbs_ecrs.monDom4mm9.v102.txt.gz
Rat (rn4)v10203-29-200816.0M68.2Mbtfbs_ecrs.monDom4rn4.v102.txt.gz
Cow (bosTau3)v10203-29-200822.9M96.6Mbtfbs_ecrs.monDom4bosTau3.v102.txt.gz
Dog (canFam2)v10203-29-200824.3M102.7Mbtfbs_ecrs.monDom4canFam2.v102.txt.gz
Chicken (galGal3)v10203-29-200810.2M41.5Mbtfbs_ecrs.monDom4galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-20084.2M17.4Mbtfbs_ecrs.monDom4xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-29-20082.0M8.8Mbtfbs_ecrs.monDom4danRer5.v102.txt.gz
Fugu (fr2)v10203-29-20081.8M7.1Mbtfbs_ecrs.monDom4fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-29-20081.7M7.0Mbtfbs_ecrs.monDom4tetNig1.v102.txt.gz
Chicken (galGal3)
Human (hg18)v10203-28-20089.4M37.8Mbtfbs_ecrs.galGal3hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-20089.1M36.6Mbtfbs_ecrs.galGal3rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-20089.2M37.1Mbtfbs_ecrs.galGal3panTro2.v102.txt.gz
Mouse (mm9)v10203-28-20087.7M30.7Mbtfbs_ecrs.galGal3mm9.v102.txt.gz
Rat (rn4)v10203-28-20087.2M29.1Mbtfbs_ecrs.galGal3rn4.v102.txt.gz
Cow (bosTau3)v10203-28-20088.2M32.9Mbtfbs_ecrs.galGal3bosTau3.v102.txt.gz
Dog (canFam2)v10203-28-20088.4M33.8Mbtfbs_ecrs.galGal3canFam2.v102.txt.gz
Opossum (monDom4)v10203-28-20089.9M39.9Mbtfbs_ecrs.galGal3monDom4.v102.txt.gz
Frog (xenTro2)v10203-28-20084.3M17.5Mbtfbs_ecrs.galGal3xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-20081.9M7.6Mbtfbs_ecrs.galGal3danRer5.v102.txt.gz
Fugu (fr2)v10203-28-20081.8M7.2Mbtfbs_ecrs.galGal3fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-28-20081.6M6.2Mbtfbs_ecrs.galGal3tetNig1.v102.txt.gz
Frog (xenTro2)
Human (hg18)v10203-29-20084.2M17.1Mbtfbs_ecrs.xenTro2hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-20084.0M16.3Mbtfbs_ecrs.xenTro2rheMac2.v102.txt.gz
Chimp (panTro2)v10203-29-20084.1M16.6Mbtfbs_ecrs.xenTro2panTro2.v102.txt.gz
Mouse (mm9)v10203-29-20083.8M15.4Mbtfbs_ecrs.xenTro2mm9.v102.txt.gz
Rat (rn4)v10203-29-20083.5M14.5Mbtfbs_ecrs.xenTro2rn4.v102.txt.gz
Cow (bosTau3)v10203-29-20083.6M14.8Mbtfbs_ecrs.xenTro2bosTau3.v102.txt.gz
Opossum (monDom4)v10203-29-20084.2M17.2Mbtfbs_ecrs.xenTro2monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-20084.5M18.4Mbtfbs_ecrs.xenTro2galGal3.v102.txt.gz
Zebrafish (danRer5)v10203-29-20081.7M7.3Mbtfbs_ecrs.xenTro2danRer5.v102.txt.gz
Fugu (fr2)v10203-29-20081.5M6.2Mbtfbs_ecrs.xenTro2fr2.v102.txt.gz
Tetraodon (tetNig1)v10203-29-20081.2M4.9Mbtfbs_ecrs.xenTro2tetNig1.v102.txt.gz
Zebrafish (danRer5)
Human (hg18)v10203-28-20082.7M10.8Mbtfbs_ecrs.danRer5hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-20082.5M10.1Mbtfbs_ecrs.danRer5rheMac2.v102.txt.gz
Mouse (mm9)v10203-28-20082.8M11.3Mbtfbs_ecrs.danRer5mm9.v102.txt.gz
Opossum (monDom4)v10203-28-20082.4M9.6Mbtfbs_ecrs.danRer5monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20082.5M9.8Mbtfbs_ecrs.danRer5galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-20082.2M8.8Mbtfbs_ecrs.danRer5xenTro2.v102.txt.gz
Fugu (fr2)v10203-28-20086.2M25.7Mbtfbs_ecrs.danRer5fr2.v102.txt.gz
Fugu (fr2)
Human (hg18)v10203-28-20082.2M9.0Mbtfbs_ecrs.fr2hg18.v102.txt.gz
Macaque (rheMac2)v10203-28-20082.1M8.5Mbtfbs_ecrs.fr2rheMac2.v102.txt.gz
Chimp (panTro2)v10203-28-20082.1M8.4Mbtfbs_ecrs.fr2panTro2.v102.txt.gz
Mouse (mm9)v10203-28-20082.3M9.1Mbtfbs_ecrs.fr2mm9.v102.txt.gz
Rat (rn4)v10203-28-20082.1M8.6Mbtfbs_ecrs.fr2rn4.v102.txt.gz
Cow (bosTau3)v10203-28-20082.2M8.9Mbtfbs_ecrs.fr2bosTau3.v102.txt.gz
Opossum (monDom4)v10203-28-20081.8M7.1Mbtfbs_ecrs.fr2monDom4.v102.txt.gz
Chicken (galGal3)v10203-28-20082.2M8.7Mbtfbs_ecrs.fr2galGal3.v102.txt.gz
Frog (xenTro2)v10203-28-20081.6M6.6Mbtfbs_ecrs.fr2xenTro2.v102.txt.gz
Zebrafish (danRer5)v10203-28-20085.3M21.5Mbtfbs_ecrs.fr2danRer5.v102.txt.gz
Tetraodon (tetNig1)v10203-28-200830.8M121.6Mbtfbs_ecrs.fr2tetNig1.v102.txt.gz
Tetraodon (tetNig1)
Human (hg18)v10203-29-20082.7M10.6Mbtfbs_ecrs.tetNig1hg18.v102.txt.gz
Macaque (rheMac2)v10203-29-20082.6M10.0Mbtfbs_ecrs.tetNig1rheMac2.v102.txt.gz
Opossum (monDom4)v10203-29-20082.2M8.4Mbtfbs_ecrs.tetNig1monDom4.v102.txt.gz
Chicken (galGal3)v10203-29-20081.9M7.3Mbtfbs_ecrs.tetNig1galGal3.v102.txt.gz
Frog (xenTro2)v10203-29-20081.4M5.3Mbtfbs_ecrs.tetNig1xenTro2.v102.txt.gz
Fugu (fr2)v10203-29-200835.8M137.2Mbtfbs_ecrs.tetNig1fr2.v102.txt.gz


File format:
> element1Location
  tfbsName1 strand_position1 strand_position2 ... strand_positionN
   ...
  tfbsNameK strand_position1 strand_position2 ... strand_positionN
> element2Location
...

For example, the record "SMAD3_Q6 +82 -101" describes two instances of the SMAD3_Q6 transcription factor binding site, one on a positive strand at the position 82, another one on a negative strand at the position 101. All positions are relative to the ECR/promoter starting position.


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