Dcode.org: Tools Developed by the Research Group of Ivan Ovcharenko at the National Library of Medicine

Dcode.org   ECR Browser   Mulan   zPicture   DiRE   SynoR   rVista 2.0   multiTF   SNPDelScore

Transcription factor binding sites (TFBS) in promoters. TFBS length data [matrix_length.txt] Promoters Base genome Gene annotation TRANSFAC Date Number of TFBS File size File Human (hg18) UCSC known genes v102 03-26-2008 5.5M 19.5Mb tfbs_promoters.hg18.knownGene.v102.txt.gz RefSeq v102 03-26-2008 5.1M 18.1Mb tfbs_promoters.hg18.refGene.v102.txt.gz Other species RefSeq v102 03-26-2008 4.8M 17.4Mb tfbs_promoters.hg18.xenoRefFlat.v102.txt.gz Macaque (rheMac2) Other species RefSeq v102 03-26-2008 2.7M 10.1Mb tfbs_promoters.rheMac2.xenoRefFlat.v102.txt.gz RefSeq v102 03-26-2008 109.0k 411.9kb tfbs_promoters.rheMac2.refGene.v102.txt.gz Chimp (panTro2) RefSeq v102 03-26-2008 4.5M 16.4Mb tfbs_promoters.panTro2.refGene.v102.txt.gz Other species RefSeq v102 03-26-2008 0 64 tfbs_promoters.panTro2.xenoRefFlat.v102.txt.gz Mouse (mm9) Other species RefSeq v102 03-26-2008 4.6M 17.0Mb tfbs_promoters.mm9.xenoRefFlat.v102.txt.gz UCSC known genes v102 03-26-2008 5.8M 21.5Mb tfbs_promoters.mm9.knownGene.v102.txt.gz RefSeq v102 03-26-2008 5.4M 19.6Mb tfbs_promoters.mm9.refGene.v102.txt.gz Rat (rn4) Other species RefSeq v102 03-26-2008 4.2M 16.0Mb tfbs_promoters.rn4.xenoRefFlat.v102.txt.gz RefSeq v102 03-26-2008 4.0M 14.6Mb tfbs_promoters.rn4.refGene.v102.txt.gz UCSC known genes v102 03-26-2008 2.1M 7.9Mb tfbs_promoters.rn4.knownGene.v102.txt.gz Cow (bosTau3) RefSeq v102 03-26-2008 3.0M 10.7Mb tfbs_promoters.bosTau3.refGene.v102.txt.gz Dog (canFam2) Other species RefSeq v102 03-26-2008 4.3M 15.4Mb tfbs_promoters.canFam2.xenoRefFlat.v102.txt.gz RefSeq v102 03-26-2008 275.7k 994.3kb tfbs_promoters.canFam2.refGene.v102.txt.gz Opossum (monDom4) Other species RefSeq v102 03-26-2008 3.9M 14.6Mb tfbs_promoters.monDom4.xenoRefFlat.v102.txt.gz RefSeq v102 03-26-2008 35.4k 139.8kb tfbs_promoters.monDom4.refGene.v102.txt.gz Chicken (galGal3) Other species RefSeq v102 03-26-2008 2.6M 9.5Mb tfbs_promoters.galGal3.xenoRefFlat.v102.txt.gz RefSeq v102 03-26-2008 1.4M 4.9Mb tfbs_promoters.galGal3.refGene.v102.txt.gz Frog (xenTro2) RefSeq v102 03-26-2008 2.0M 7.3Mb tfbs_promoters.xenTro2.refGene.v102.txt.gz Zebrafish (danRer5) RefSeq v102 03-26-2008 2.6M 10.1Mb tfbs_promoters.danRer5.refGene.v102.txt.gz File format: > element1Location   tfbsName1 strand_position1 strand_position2 ... strand_positionN    ...   tfbsNameK strand_position1 strand_position2 ... strand_positionN > element2Location ... For example, the record "SMAD3_Q6 +82 -101" describes two instances of the SMAD3_Q6 transcription factor binding site, one on a positive strand at the position 82, another one on a negative strand at the position 101. All positions are relative to the ECR/promoter starting position.
NCBI DCODE.org Comparative Genomics Developments (www.dcode.org)